A one day course hosted by the Schwede group, based in the Biozentrum at the University of Basel.

The program for this course is as follows:

Session 1. Introduction to Jalview.

• starting the application
• importing alignments
• basic editing and creating figures.

Recommended for anyone not familiar with working with sequences and sequence alignments, or has never edited or published alignments with Jalview

12-1pm Lunch

Session 2. Alignment and alignment analysis.

• creating sequence alignments

• importing and calculating trees

• tree based alignment analysis

• viewing sequence annotation

• secondary structure prediction

• viewing structures.

Recommended for anyone wanting to use Jalview to access multiple alignment and alignment analysis software or for function analysis