These installation notes relate to the latest release version 2.11.4.1
conda install -c bioconda jalview

Installing with Conda

A Jalview conda package is available (tested on OSX and Linux) thanks to the great folk over at Bioconda.

To install, setup bioconda as described at Bioconda’s Usage instructions.

Then create a separate conda environment for Jalview, with Jalview installed in it:

$ 
conda create -n jalview jalview

To run Jalview, select the new environment:

$ 
conda activate jalview

and then launch Jalview from the command line:

$ 
jalview

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Thanks to ej-technologies for granting a free install4j license to the Jalview Open Source Project. Jalview's desktop installers were built with the install4j multi-platform installer builder and Gradle.