Issues Resolved

General

• Mapping of cDNA to protein in split frames incorrect when sequence start > 1
• Broken images in filter column by annotation dialog documentation
• Feature colours not parsed from features file
• Exceptions and incomplete link URLs recovered when loading a features file containing HTML tags in feature description

Application

• Annotations corrupted after BioJS export and reimport
• Incorrect sequence limits after Fetch DB References with ’trim retrieved sequences'
• Incorrect warning about deleting all data when deleting selected columns
• Patch to build system for shipping properly signed JNLP templates for webstart launch
• EMBL-PDBe fetcher/viewer dialogs do not offer unreleased structures for download or viewing
• Tab/space/return keystroke operation of EMBL-PDBe fetcher/viewer dialogs works correctly
• Disabled ‘minimise’ button on Jalview windows running on OSX to workaround redraw hang bug
• Split cDNA/Protein view position and geometry not recovered from jalview project
• Initial enabled/disabled state of annotation menu sorter ‘show autocalculated first/last’ corresponds to alignment view
• Restoring of Clustal, RNA Helices and T-Coffee color schemes from BioJSON

Applet

• Reorder sequences mirrored in cDNA/Protein split frame
• Applet with Jmol examples not loading correctly