Jalview 2.3

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WARNING! Downloading this JVL file might automatically switch your Jalview installation to version 2.3 (without auto-updates).

To revert back to the Jalview RELEASE channel, please visit the Using the Jalview Launch file page.

Download the Jalview Launch file (.jvl) for version 2.3?

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New Features

  • Jmol 11.0.2 integration
  • PDB views stored in Jalview XML files
  • Slide sequences
  • Edit sequence in place
  • EMBL CDS features
  • DAS Feature mapping
  • Feature ordering
  • Alignment Properties
  • Annotation Scores
  • Sort by scores
  • Feature/annotation editing in applet

Issues Resolved

  • Headless state operation in 2.2.1
  • Incorrect and unstable DNA pairwise alignment
  • Cut and paste of sequences with annotation
  • Feature group display state in XML
  • Feature ordering in XML
  • blc file iteration selection using filename # suffix
  • Stockholm alignment properties
  • Stockhom alignment secondary structure annotation
  • 2.2.1 applet had no feature transparency
  • Number pad keys can be used in cursor mode
  • Structure Viewer mirror image resolved