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💡 Go beyond viewing AlphaFold structures in Jalview! Explore pLDDT and PAE metrics to assess prediction confidence, colour structures and identify putative protein domains. ⤵️ Video tutorials in comments

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💭 Do JPred’s sequence-based secondary structure predictions agree with AlphaFold’s 3D structure-based ones? Find out with Jalview! Learn how to compare outputs to explore: ✅ Locations of shared helices and sheets ✅ Regions of prediction confidence ▶️ Watch: www.youtube.com/watch?v=x7SH...

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This week, we trained new University of Dundee research students exploring areas in 🧫 biology, 🪴plant sciences, 🧬bioinformatics, 🦷 dentistry & 🤰reproductive medicine. From sequence alignment & analysis to 3D structure discovery, we explored how Jalview can support their research. Happy Jalviewing!

Three female students using Jalview, with the PC of the nearest student showing the Jalview desktop with a multiple sequence alignment shaded using the turn propensity colour scheme developed using mathematical values computed by Peter Y. Chou and Gerald D. Fasman in the 1970s.